PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.282040.1
Common NameWRKY5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 283aa    MW: 30971.1 Da    PI: 10.2108
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.282040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31212270259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D+y+WrKYGqK++kgs++pr+YYrC+s  gCp++kkver+++dp ++ +tYeg+H+h+
  Cucsa.282040.1 212 SDEYSWRKYGQKPIKGSPYPRGYYRCSSVkGCPARKKVERARDDPAMLLVTYEGDHRHP 270
                     69*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-12165209IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-32199272IPR003657WRKY domain
PROSITE profilePS5081131.181206272IPR003657WRKY domain
SuperFamilySSF1182908.76E-27209272IPR003657WRKY domain
SMARTSM007741.3E-36211271IPR003657WRKY domain
PfamPF031061.0E-26213270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAVDLAAFPA FFDDQTAIEE AATAGLQSMN HLIHLLSKQH HHHHHHHSES PNNIDLNSSL  60
LTDFTVSKFK RLISLLNRTG HARFRRGPSD SPNPVLNSLD PPQKTHFSKL NFSPVSKVPE  120
SRDSTTTSSF VSTVTGDGSV SNGKLDLSVY ATPPANAGKP PLAMKSKCHD VSGFGCKVPN  180
SKLCHCAKRR KSGMKKTVKV PAISSKIADI PSDEYSWRKY GQKPIKGSPY PRGYYRCSSV  240
KGCPARKKVE RARDDPAMLL VTYEGDHRHP HPTVTDGVSQ KS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-202072721074WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840100.0GU984010.1 Cucumis sativus WRKY protein (WRKY5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292683.10.0probable WRKY transcription factor 11
SwissprotQ9SV155e-90WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLE7CEV90.0E7CEV9_CUCSA; WRKY protein
STRINGVIT_04s0069g00920.t017e-90(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.11e-81WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]